PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0429s0018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 329aa    MW: 37289.9 Da    PI: 6.9642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0429s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.2e-18131220198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f+++h+ k  e+ ++tlede+g++   k+  ++++    l++GW++F+ +++L +gD +vF+l++ ++f
  Kalax.0429s0018.1.p 131 FVKPMLQSHVTGGFWLGLPQRFCKAHMPK--EDEMMTLEDEDGNESPSKYLADRTG----LSGGWRGFALDHELVDGDALVFQLIRATKF 214
                          89************************855..5569***************555555....*************************98888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Kalax.0429s0018.1.p 215 --KVYIIR 220
                          ..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-25124222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-23124222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-28129220No hitNo description
SMARTSM010197.3E-24131222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111131222IPR003340B3 DNA binding domain
PfamPF023622.5E-17131220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVASATSNYE ELRRQRMEEN KKRMEELNLL NLSNSLSTAT PKPSPVKKQW KPKSARKEVD  60
LSAVRRSSRT ADKPQPDYKE GMIEPLGSLR RGPYRRRDLL NRVYASDEFR MYAVQRAEQL  120
ESELGSEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMPKE DEMMTLEDED GNESPSKYLA  180
DRTGLSGGWR GFALDHELVD GDALVFQLIR ATKFKVYIIR VNEHENGDEN NEDVADEDGN  240
DVVLLKPVPK AKPLKVAKPL KVAESSPGTR RSRRKKSTYK DEDDDDDDDD PGADDDVFLV  300
KVPETESGEL TDPSPGTRRS KRKKSSRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323RRSKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647760.11e-106PREDICTED: B3 domain-containing protein At3g19184 isoform X1
SwissprotQ1G3M39e-89Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLF6HQC11e-107F6HQC1_VITVI; Putative uncharacterized protein
STRINGVIT_03s0063g00620.t011e-107(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-80B3 family protein